GetGRangesFromEnsDb: GetGRangesFromEnsDb
In wzthu/ATACpipe: An Easy-to-use Systematic pipeline for ATACseq data analysis
GetGRangesFromEnsDb R Documentation
GetGRangesFromEnsDb
Description
Extract genomic ranges from EnsDb object
Usage
GetGRangesFromEnsDb(
ensdb,
standard.chromosomes = TRUE,
biotypes = c("protein_coding", "lincRNA", "rRNA", "processed_transcript"),
verbose = TRUE
)
Arguments
ensdb
An EnsDb object
standard.chromosomes
Keep only standard chromosomes
biotypes
Biotypes to keep
verbose
Display messages
Details
Pulls the transcript information for all chromosomes from
an EnsDb object.
This wraps crunch and applies the extractor
function to all chromosomes present in the EnsDb object.
Value
GRanges
Examples
print("see https://satijalab.org/signac/reference/getgrangesfromensdb")
wzthu/ATACpipe documentation built on Aug. 12, 2022, 7:38 a.m.
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| GetGRangesFromEnsDb | R Documentation |
GetGRangesFromEnsDb
Description
Extract genomic ranges from EnsDb object
Usage
GetGRangesFromEnsDb(
ensdb,
standard.chromosomes = TRUE,
biotypes = c("protein_coding", "lincRNA", "rRNA", "processed_transcript"),
verbose = TRUE
)
Arguments
ensdb |
An EnsDb object |
standard.chromosomes |
Keep only standard chromosomes |
biotypes |
Biotypes to keep |
verbose |
Display messages |
Details
Pulls the transcript information for all chromosomes from
an EnsDb object.
This wraps crunch and applies the extractor
function to all chromosomes present in the EnsDb object.
Value
GRanges
Examples
print("see https://satijalab.org/signac/reference/getgrangesfromensdb")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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