MultiRegionCutMatrix: MultiRegionCutMatrix
In wzthu/ATACpipe: An Easy-to-use Systematic pipeline for ATACseq data analysis
MultiRegionCutMatrix R Documentation
MultiRegionCutMatrix
Description
Generate cut matrix for many regions
Usage
MultiRegionCutMatrix(
object,
regions,
group.by = NULL,
fragments = NULL,
assay = NULL,
cells = NULL,
verbose = FALSE
)
Arguments
object
A Fragment object
regions
A set of GRanges
group.by
Name of grouping variable to use
fragments
A list of Fragment objects
assay
Name of the assay to use
cells
Vector of cells to include
verbose
Display messages
Details
Run CutMatrix on multiple regions and add them together.
Assumes regions are pre-aligned.
wzthu/ATACpipe documentation built on Aug. 12, 2022, 7:38 a.m.
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| MultiRegionCutMatrix | R Documentation |
MultiRegionCutMatrix
Description
Generate cut matrix for many regions
Usage
MultiRegionCutMatrix( object, regions, group.by = NULL, fragments = NULL, assay = NULL, cells = NULL, verbose = FALSE )
Arguments
object |
A Fragment object |
regions |
A set of GRanges |
group.by |
Name of grouping variable to use |
fragments |
A list of Fragment objects |
assay |
Name of the assay to use |
cells |
Vector of cells to include |
verbose |
Display messages |
Details
Run CutMatrix on multiple regions and add them together. Assumes regions are pre-aligned.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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