Fragment-class: The Fragment class
In wzthu/ATACpipe: An Easy-to-use Systematic pipeline for ATACseq data analysis
Fragment-class R Documentation
The Fragment class
Description
The Fragment class is designed to hold information needed for working with
fragment files. This class is from Signac.
Slots
pathPath to the fragment file on disk.
See https://support.10xgenomics.com/single-cell-atac/software/pipelines/latest/output/fragments
hashA vector of two md5sums: first element is the md5sum of the
fragment file, the second element is the md5sum of the index.
cellsA named vector of cells where each element is the cell barcode
as it appears in the fragment file.
Examples
frag <- new("Fragment", path = "file path", hash = "file hash")
wzthu/ATACpipe documentation built on Aug. 12, 2022, 7:38 a.m.
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| Fragment-class | R Documentation |
The Fragment class
Description
The Fragment class is designed to hold information needed for working with fragment files. This class is from Signac.
Slots
pathPath to the fragment file on disk. See https://support.10xgenomics.com/single-cell-atac/software/pipelines/latest/output/fragments
hashA vector of two md5sums: first element is the md5sum of the fragment file, the second element is the md5sum of the index.
cellsA named vector of cells where each element is the cell barcode as it appears in the fragment file.
Examples
frag <- new("Fragment", path = "file path", hash = "file hash")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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