kang_DNArepair: list of 151 genes annotated as DNA repair pathway members

In vjcitn/BiocOncoTK: Bioconductor components for general cancer genomics

list of 151 genes annotated as DNA repair pathway members

Description

list of 151 genes annotated as DNA repair pathway members

Usage

kang_DNArepair

Format

named list

Note

The zipped PDF was read using pdftools::pdf_text and then manually organized. All gene symbols present in curatedTCGAData RNASeq2GeneNorm rownames. The list elements are ATM, BER, FA.HR, MMR, NER, NHEJ, OTHER, TLS, RECQ, and XLR. These denote, respectively, ataxia-telangiectasia-mutated, base excision repair, Fanconi anemia/homologous recombination, mismatch repair, nucleotide excision repair, non-homologous end joining, other, translesion synthesis, recQ helicase pathway, and cross-link repair.

Source

https://academic.oup.com/jnci/article/104/9/670/872781#supplementary-data

vjcitn/BiocOncoTK documentation built on Feb. 14, 2023, 11:56 p.m.