ggFeatureSegs: generate a ggplot of segments of gene-like regions

In vjcitn/BiocOncoTK: Bioconductor components for general cancer genomics

generate a ggplot of segments of gene-like regions

Description

generate a ggplot of segments of gene-like regions

Usage

ggFeatureSegs(
  chrname = "chr15",
  start = 20450000,
  end = 20730000,
  db = EnsDb.Hsapiens.v75::EnsDb.Hsapiens.v75,
  slstyle = "UCSC",
  ylab.in = "ensembl\nnoncoding"
)

Arguments

chrname	character(1) chromosome tag
start	numeric(1) start of interval
end	numeric(1) end of interval
db	EnsDb instance for example
slstyle	character(1) tag for seqlevelsStyle
ylab.in	character(1) for use as y axis tag

Value

ggplot instance

Note

Most annotation is turned off with element_blank()

Examples

ggFeatureSegs

vjcitn/BiocOncoTK documentation built on Feb. 14, 2023, 11:56 p.m.