add_sym: add symbols in rowData to a SummarizedExperiment that has...
In vjcitn/BiocOncoTK: Bioconductor components for general cancer genomics
add_sym R Documentation
add symbols in rowData to a SummarizedExperiment that has Entrez IDs for rownames
Description
add symbols in rowData to a SummarizedExperiment that has Entrez IDs for rownames
Usage
add_sym(x)
Arguments
x
SummarizedExperiment instance
Note
Will fail if 'symbol' is a column of rowData(x)
Examples
if (interactive()) {
bq = pancan_BQ()
rnse = try(buildPancanSE(bq, assay="RNASeqv2"))
if (inherits(rnse, "try-error")) stop("probably need CGC_BILLING set in environment or with pancan_BQ")
add_sym(rnse)
}
vjcitn/BiocOncoTK documentation built on Feb. 14, 2023, 11:56 p.m.
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| add_sym | R Documentation |
add symbols in rowData to a SummarizedExperiment that has Entrez IDs for rownames
Description
add symbols in rowData to a SummarizedExperiment that has Entrez IDs for rownames
Usage
add_sym(x)
Arguments
x |
SummarizedExperiment instance |
Note
Will fail if 'symbol' is a column of rowData(x)
Examples
if (interactive()) {
bq = pancan_BQ()
rnse = try(buildPancanSE(bq, assay="RNASeqv2"))
if (inherits(rnse, "try-error")) stop("probably need CGC_BILLING set in environment or with pancan_BQ")
add_sym(rnse)
}
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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