bipg_tests: configure a bipartite graph relating tumor type to gene,...

In vjcitn/BiocOncoTK: Bioconductor components for general cancer genomics

configure a bipartite graph relating tumor type to gene, using graphNEL

Description

configure a bipartite graph relating tumor type to gene, using graphNEL

Usage

bipg_tests(
  stattab,
  genes_adverse = NA,
  genes_favorable = NA,
  gpar_cex = 0.65,
  gpar_lwd = 0
)

Arguments

stattab	a data.frame with columns 'tumor', 'gene', and 'tstat'
genes_adverse	a vector of genes whose increased expression is regarded as adverse
genes_favorable	a vector of genes whose increased expression is regarded as favorable
gpar_cex	tune size of graph labels
gpar_lwd	tune appearance of node boundaries

Value

a graphNEL instance (graph package)

Examples

bipg_tests(k23sig)

vjcitn/BiocOncoTK documentation built on Feb. 14, 2023, 11:56 p.m.