Files in vjcitn/BiocOncoTK
Bioconductor components for general cancer genomics
.dockstore.yml
DESCRIPTION
NAMESPACE
R/SEbuilder.R
R/add_sym.R
R/app.R
R/bipg_tests.R
R/clue.R
R/data.R
R/get_plate.R
R/loadPatel.R
R/map_acronym_to_system.R
R/mc3utils.R
R/oncoprintISB.R
R/pancan.R
R/rainfall3.R
R/utils.R
README.md
brca4upset.png
data/CCLE_DRUG_BROAD.rda
data/MSIsensor.10k.rda
data/annotTabs.rda
data/brcaMAE.rda
data/cell_70138.rda
data/darmGBMcls.rda
data/dingMSI.rda
data/fireMSI.rda
data/icd10_c.rda
data/k23sig.rda
data/kang_DNArepair.rda
data/map_tcga_ncit.rda
data/molpo_3utr.rda
data/molpo_5utr.rda
data/molpo_CDS.rda
data/molpo_WGS.rda
data/pancan.clin.varnames.rda
data/pancan_sampTypeMap.rda
data/patient_to_tumor_code.rda
data/pert_70138.rda
data/small_msi.rda
inst/MSIsensor/MSIsensDing.csv.gz
inst/MSIsensor/dingMSI.rda
inst/mocks/NRAS_AHR.rda
inst/mocks/ccleNRAS.rda
inst/mocks/nrasdf.rda
inst/pamphlets/bioccl.bib
inst/pamphlets/bioccl0518.Rmd
inst/pamphlets/bioccl1018.Rmd
inst/pamphlets/blcaMAE.rda
inst/pamphlets/br1.png
inst/pamphlets/br2.png
inst/pamphlets/br3.png
inst/pamphlets/microsatpan2.png
inst/pamphlets/pancode.png
inst/pamphlets/panelCode.png
inst/scripts/do5utr_script.R
inst/scripts/doCDS_script.R
inst/scripts/msireg/Dockerfile
inst/scripts/msireg/exprByMSI_csv.R
inst/scripts/msireg/rbind_RDS_to_RDS.R
inst/scripts/msireg/rbind_csvs_to_RDS.R
inst/scripts/msireg/report_patients_by_txg.wdl
inst/scripts/msireg/survey_tcga_tumors.wdl
inst/scripts/msireg/testin.json
man/CCLE_DRUG_BROAD.Rd
man/MSIsensor.10k.Rd
man/TcgaMutCounts.Rd
man/TcgaNIndWithAnyMut.Rd
man/add_sym.Rd
man/annotTabs.Rd
man/bindMSI.Rd
man/bipg_tests.Rd
man/brcaMAE.Rd
man/buildPancanSE.Rd
man/cell_70138.Rd
man/clueDemos.Rd
man/clueServiceNames.Rd
man/darmGBMcls.Rd
man/dingMSI.Rd
man/featIDMapper.Rd
man/fireMSI.Rd
man/get_plates.Rd
man/ggFeatDens.Rd
man/ggFeatureSegs.Rd
man/ggMutDens.Rd
man/icd10_c.Rd
man/k23sig.Rd
man/kang_DNArepair.Rd
man/loadPatel.Rd
man/log10pl1.Rd
man/map_tcga_ncit.Rd
man/mc3toGR.Rd
man/molpo_3utr.Rd
man/molpo_5utr.Rd
man/molpo_CDS.Rd
man/molpo_WGS.Rd
man/multiviz.Rd
man/oncoPrintISB.Rd
man/pancan.clin.varnames.Rd
man/pancan_BQ.Rd
man/pancan_app.Rd
man/pancan_clinicalTabVarnames.Rd
man/pancan_longname.Rd
man/pancan_sampTypeMap.Rd
man/pancan_tabulate.Rd
man/patient_to_tumor_code.Rd
man/pertClasses.Rd
man/pert_70138.Rd
man/query_clue.Rd
man/reexports.Rd
man/replaceRownames.Rd
man/small_msi.Rd
man/tumNorSet.Rd
man/utils.Rd
man/viz_msi_raw.Rd
microsatpan.png
nonco3.png
oREADME.md
pancanApp.png
tests/testthat.R
tests/testthat/.gitignore
tests/testthat/testBQ.R
tests/testthat/test_dockstore_scripts.R
vignettes/BiocOncoTK.Rmd
vignettes/brca4upset.png
vignettes/curatedMSIData.Rmd
vignettes/maptcga.Rmd
vignettes/microsatpan.png
vignettes/microsatpan2.png
vignettes/nonco3.png
vignettes/pancanApp.png
