deva_results: Utility function that allows easier grabbing of data
In ruggleslab/blackSheepR: Outlier Analysis for pairwise differential comparison

View source: R/outlier_analysis_functions.R

deva_results

R Documentation

Utility function that allows easier grabbing of data

Description

Utility function that allows easier grabbing of data

Usage

deva_results(deva_out, ID = NULL, type = NULL)

Arguments

`deva_out`	output from the deva function
`ID`	The keyword to search through analyses and grab desired output
`type`	<"table" \| "heatmap" \| "fraction_table" \| "median" \| "boundary"> to return the desirted analysis type

Value

desired subset of analysis from deva

Examples


suppressPackageStartupMessages(library(SummarizedExperiment))
data("sample_phosphodata")
data("sample_annotationdata")

se = SummarizedExperiment(
    assays = list(counts = as.matrix(sample_phosphodata[1:1000,])),
    colData = DataFrame(sample_annotationdata))

deva_out = deva(se = se,
    analyze_negative_outliers = FALSE, aggregate_features = TRUE,
    feature_delineator = "-", fraction_samples_cutoff = 0.3,
    fdrcutoffvalue = 0.1)

deva_results(deva_out, ID = "outlieranalysis", type = "table")

ruggleslab/blackSheepR documentation built on Feb. 27, 2023, 10:39 p.m.