create_heatmap: Plot out a heatmap
In ruggleslab/blackSheepR: Outlier Analysis for pairwise differential comparison

View source: R/outlier_plotting_functions.R

create_heatmap

R Documentation

Plot out a heatmap

Description

Plot out a heatmap

Usage

create_heatmap(counttab = counttab,
    colmetatable = NULL, colannotationlist = NULL,
    colclusterparam = FALSE, rowclusterparam = FALSE,
    nameparam)

Arguments

`counttab`	table with counts, samples -x-axis, features -y-axis
`colmetatable`	the metatable containing information for the columns
`colannotationlist`	annotation table for columns, based off colmetatable
`colclusterparam`	cluster the columns?
`rowclusterparam`	cluster the rows?
`nameparam`	the title on the heatmap

Value

prints a pdf heatmap out to the designated outpath

Examples

data("sample_phosphodata")
counttab <- sample_phosphodata
nameparam <- "testplot"

create_heatmap(counttab = counttab,
    colmetatable = NULL,
    colannotationlist = NULL,colclusterparam = FALSE,
    rowclusterparam = FALSE, nameparam)

ruggleslab/blackSheepR documentation built on Feb. 27, 2023, 10:39 p.m.