annotationlist_builder: Create the annotation object for plotting in a heatmap
In ruggleslab/blackSheepR: Outlier Analysis for pairwise differential comparison

View source: R/outlier_plotting_functions.R

annotationlist_builder

R Documentation

Create the annotation object for plotting in a heatmap

Description

Create the annotation object for plotting in a heatmap

Usage

annotationlist_builder(metatable, customcolorlist = NULL)

Arguments

`metatable`	the metatable containing information for the columns
`customcolorlist`	DEFAULT: NULL, enter colorlist to manually set colors

Value

return the annotation object

Examples

metatable <- data.frame(row.names = c("samp1", "samp2", "samp3", "samp4"),
    A = c(rep("high", 2), rep("low", 2)), B = seq(1,7,2))
customcolorlist <- list(A = c("high" = "red", "low" = "blue"),
    B = circlize::colorRamp2(seq(-5, 5, length = 3),
    RColorBrewer::brewer.pal(3, "Reds")))
annotationlist_builder(metatable, customcolorlist)

ruggleslab/blackSheepR documentation built on Feb. 27, 2023, 10:39 p.m.