Files in quon-titative-biology/scAlign

An alignment and integration method for single cell genomics

R/MultiCCA.R R/architectures.R R/backend_decoder.R R/backend_encoder.R R/data.R R/scAlign.R R/scAlignClass.R R/scAlignMulti.R R/scAlignSeuratWrapper.R R/train_decoder.R R/train_encoder.R R/train_encoder_multi.R R/utils.R README.md man/DecoderVariance.Rd man/ExtractGenes.Rd man/GetCharMetadata.Rd man/GetCrit.Rd man/MeanDecoderVariance.Rd man/PlotTSNE.Rd man/RunMultiCCA.Rd man/SelectColors.Rd man/UpdateW.Rd man/alignment_score.Rd man/as.SingleCellExperimentList.Rd man/cellbench.Rd man/compute_kernel_matrix.Rd man/decoderModel_add_mse_loss.Rd man/decoderModel_calc_projection.Rd man/decoderModel_create_train_op.Rd man/decoderModel_emb_to_proj.Rd man/decoderModel_train_decoder.Rd man/decoder_large.Rd man/decoder_medium.Rd man/decoder_small.Rd man/define_kernel_matrix.Rd man/dot-check_all_args.Rd man/dot-check_tensorflow.Rd man/dot-data_setup.Rd man/dot-early_stop.Rd man/dot-is.wholenumber.Rd man/dot-learning_rate.Rd man/dot-plotTSNE.Rd man/encoderModel_add_logit_loss.Rd man/encoderModel_add_semisup_loss_data_driven.Rd man/encoderModel_calc_embedding.Rd man/encoderModel_calc_logit.Rd man/encoderModel_create_train_op.Rd man/encoderModel_data_to_embedding.Rd man/encoderModel_embedding_to_logit.Rd man/encoderModel_gaussian_kernel.Rd man/encoderModel_train_encoder.Rd man/encoderModel_train_encoder_multi.Rd man/encoder_large.Rd man/encoder_medium.Rd man/encoder_small.Rd man/gaussianKernel.Rd man/l2n.Rd man/scAlign.Rd man/scAlignArguments.Rd man/scAlignCreateObject.Rd man/scAlignMulti.Rd man/scAlignOptions.Rd tests/testthat.R tests/testthat/test-scalign.R