compute_kernel_matrix: Computes kernel matrix
In quon-titative-biology/scAlign: An alignment and integration method for single cell genomics

Adds the defined kernel to the operation graph for high dimensional pairwise data similarity

compute_kernel_matrix(
  data,
  data_shape,
  labels = NULL,
  method = NULL,
  perplexity = 30,
  diag = "zero"
)

`data`	cell x feature data matrix
`data_shape`	number of features for data
`labels`	cell x 1 annotation (label) vector
`method`	Kernel to compute pairwise cell similarity
`perplexity`	neighborhood parameter for gaussian kernel
`diag`	indicator for self similarity

Tensorflow op

quon-titative-biology/scAlign documentation built on Nov. 17, 2021, 9:57 a.m.

quon-titative-biology/scAlign index

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