encoderModel_train_encoder: encoder for scAlign

In quon-titative-biology/scAlign: An alignment and integration method for single cell genomics

Description

Aligns paired data into a joint embedding space.

Usage

encoderModel_train_encoder(
  FLAGS,
  CV,
  config,
  num_labels,
  data_shape,
  obj1_name,
  obj2_name,
  source_data,
  source_labels,
  target_data,
  target_labels
)

Arguments

FLAGS	Tensorflow run arguments.
CV	Model that is being run.
config	Hardware configuration options.
num_labels	Number of unique labels.
data_shape	Dimensions of input data.
source_data	Source data matrix (cell x feature).
source_labels	Source data labels.
target_data	Target data matrix (cell x feature).
target_labels	Target data labels.

Value

Final alignment results

quon-titative-biology/scAlign documentation built on Nov. 17, 2021, 9:57 a.m.