API for netZoo/netZooR
Unified methods for the inference and analysis of gene regulatory networks
| Global functions | |
|---|---|
| .onLoad | Source code |
| BuildSubnetwork | Man page Source code |
| CalculatePValues | Man page Source code |
| EsqS | Source code |
| FindConnectionsForAllHopCounts | Man page Source code |
| FindSignificantEdgesForHop | Man page Source code |
| GenerateNullPANDADistribution | Man page Source code |
| PlotNetwork | Man page Source code |
| RunBLOBFISH | Man page Source code |
| SignificantBreadthFirstSearch | Man page Source code |
| TIGER_expr | Man page |
| TIGER_prior | Man page |
| VarS | Source code |
| adj2el | Man page Source code |
| adj2regulon | Man page Source code |
| adjMatToElist | Man page Source code |
| alpaca | Man page Source code |
| alpacaCommunityStructureRotation | Man page Source code |
| alpacaComputeDWBMmatmScale | Man page Source code |
| alpacaComputeDifferentialScoreFromDWBM | Man page Source code |
| alpacaComputeWBMmat | Man page Source code |
| alpacaCrane | Man page Source code |
| alpacaDeltaZAnalysis | Man page Source code |
| alpacaDeltaZAnalysisLouvain | Man page Source code |
| alpacaExtractTopGenes | Man page Source code |
| alpacaGOtabtogenes | Man page Source code |
| alpacaGenLouvain | Man page Source code |
| alpacaGetMember | Man page Source code |
| alpacaGoToGenes | Man page Source code |
| alpacaListToGo | Man page Source code |
| alpacaMetaNetwork | Man page Source code |
| alpacaNodeToGene | Man page Source code |
| alpacaObjectToDfList | Man page Source code |
| alpacaRotationAnalysis | Man page Source code |
| alpacaRotationAnalysisLouvain | Man page Source code |
| alpacaSimulateNetwork | Man page Source code |
| alpacaTestNodeRank | Man page Source code |
| alpacaTidyConfig | Man page Source code |
| alpacaTopEnsembltoTopSym | Man page Source code |
| alpacaWBMlouvain | Man page Source code |
| annotateFromBiomart | Man page Source code |
| bladder | Man page |
| checkMisAnnotation | Man page Source code |
| checkTissuesToMerge | Man page Source code |
| cobra | Man page Source code |
| condorCluster | Man page Source code |
| condorCoreEnrich | Man page Source code |
| condorCreateObject | Man page Source code |
| condorMatrixModularity | Man page Source code |
| condorModularityMax | Man page Source code |
| condorPlotCommunities | Man page Source code |
| condorPlotHeatmap | Man page Source code |
| condorQscore | Man page Source code |
| condorRun | Man page Source code |
| craneBipartite | Man page Source code |
| craneUnipartite | Man page Source code |
| createCondorObject | Man page Source code |
| createDiffPandaStyle | Source code |
| createPandaStyle | Man page Source code |
| degreeAdjust | Man page Source code |
| domonster | Man page Source code |
| downloadGTEx | Man page Source code |
| dragon | Man page Source code |
| el2adj | Man page Source code |
| el2regulon | Man page Source code |
| elistAddTags | Man page Source code |
| elistIsEdgeOrderEqual | Man page Source code |
| elistRemoveTags | Man page Source code |
| elistSort | Man page Source code |
| elistToAdjMat | Man page Source code |
| estimatePenaltyParameters | Source code |
| estimate_kappa_dragon | Source code |
| estimate_p_values_dragon | Source code |
| exon.size | Man page |
| extractMatrix | Man page Source code |
| filterGenes | Man page Source code |
| filterLowGenes | Man page Source code |
| filterMissingGenes | Man page Source code |
| filterSamples | Man page Source code |
| genes | Man page |
| get_partial_correlation_dragon | Source code |
| get_partial_correlation_from_precision | Source code |
| get_precision_matrix_dragon | Source code |
| get_shrunken_covariance_dragon | Source code |
| isElist | Man page Source code |
| jutterDegree | Man page Source code |
| kabsch | Source code |
| ks.permute | Source code |
| lioness | Man page Source code |
| lionessPy | Man page Source code |
| log_lik_shrunken | Source code |
| max.component | Source code |
| monster | Man page Source code |
| monsterBereFull | Man page Source code |
| monsterCalculateTmPValues | Man page Source code |
| monsterCheckDataType | Man page Source code |
| monsterGetTm | Man page Source code |
| monsterHclHeatmapPlot | Man page Source code |
| monsterMonsterNI | Man page Source code |
| monsterPlotMonsterAnalysis | Man page Source code |
| monsterPrintMonsterAnalysis | Man page Source code |
| monsterRes | Man page |
| monsterTransformationMatrix | Man page Source code |
| monsterTransitionNetworkPlot | Man page Source code |
| monsterTransitionPCAPlot | Man page Source code |
| monsterdTFIPlot | Man page Source code |
| mut.ucec | Man page |
| normalizeNetwork | Source code Source code |
| normalizeTissueAware | Man page Source code |
| otter | Man page Source code |
| pandaDiffEdges | Man page Source code |
| pandaPy | Man page Source code |
| pandaToAlpaca | Man page Source code |
| pandaToCondorObject | Man page Source code |
| perm.pval | Source code |
| plot.enrich.hist | Source code |
| plotCMDS | Man page Source code |
| plotDensity | Man page Source code |
| plotHeatmap | Man page Source code |
| prepResult | Source code Source code |
| priorPp | Man page Source code |
| puma | Man page Source code |
| qsmooth | Man page Source code |
| qstats | Man page Source code |
| risk | Source code |
| risk_orig | Source code |
| runEgret | Man page Source code |
| sambar | Man page Source code |
| sambarConvertgmt | Man page Source code |
| sambarCorgenelength | Man page Source code |
| sambarDesparsify | Man page Source code |
| scale | Source code |
| skin | Man page |
| small1976 | Man page |
| sourcePPI | Man page Source code |
| spider | Man page Source code |
| tanimoto | Source code Source code |
| tiger | Man page Source code |
| update.diagonal | Source code Source code |
| visDiffPandaInCytoscape | Source code |
| visPandaInCytoscape | Man page Source code |
| wilcox.permute | Source code |
| yeast | Man page |
