convertFishalyserCsvToCountMatrix: Function to convert CSV output of the FISHalyseR automatic...
In markowetzlab/frenchFISH: Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections
Description
Usage
Arguments
Value
Examples
Description
Function to convert CSV output of the FISHalyseR automatic FISH
splot counting software to a count matrix suitable for input to
frenchFISH's getAutomaticCountsEstimates.
Usage
1
convertFishalyserCsvToCountMatrix(pathToFishalyserCsv)
Arguments
pathToFishalyserCsv
The path to the CSV file of automatic spot
counts outputted by FISHalyseR
Value
A count matrix suitable for input to getAutomaticCountsEstimates
Examples
1
2
probeCounts<-convertFishalyserCsvToCountMatrix(
system.file("extdata", "SampleFISH.jpg_data.csv", package="frenchFISH"))
markowetzlab/frenchFISH documentation built on June 28, 2020, 8:18 p.m.
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Description Usage Arguments Value Examples
Description
Function to convert CSV output of the FISHalyseR automatic FISH splot counting software to a count matrix suitable for input to frenchFISH's getAutomaticCountsEstimates.
Usage
1 | convertFishalyserCsvToCountMatrix(pathToFishalyserCsv)
|
Arguments
pathToFishalyserCsv |
The path to the CSV file of automatic spot counts outputted by FISHalyseR |
Value
A count matrix suitable for input to getAutomaticCountsEstimates
Examples
1 2 | probeCounts<-convertFishalyserCsvToCountMatrix(
system.file("extdata", "SampleFISH.jpg_data.csv", package="frenchFISH"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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