README.md
In markowetzlab/frenchFISH: Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections
FrenchFISH
FrenchFISH is an R package for for correcting spot counts used for quantifying DNA copy-number from fluorescence in situ hybridisation of tissue sections. It can correct either spot counts from manual counting, or from an automatic spot counting software. The underlying models used to correct these counts are Poissonian. Details can be found in this manuscript.
Installation
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("frenchFISH")
Getting Started
vignettes/frenchFISH.Rmd
Disclaimer
Note that this is prerelease software. Please use accordingly.
markowetzlab/frenchFISH documentation built on June 28, 2020, 8:18 p.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
FrenchFISH
FrenchFISH is an R package for for correcting spot counts used for quantifying DNA copy-number from fluorescence in situ hybridisation of tissue sections. It can correct either spot counts from manual counting, or from an automatic spot counting software. The underlying models used to correct these counts are Poissonian. Details can be found in this manuscript.
Installation
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("frenchFISH")
Getting Started
vignettes/frenchFISH.Rmd
Disclaimer
Note that this is prerelease software. Please use accordingly.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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