checkManualCountsEstimatesArguments: Helper function to check the arguments input to...

In markowetzlab/frenchFISH: Poisson Models for Quantifying DNA Copy-number from FISH Images of Tissue Sections

Description

Helper function to check the arguments input to getManualCountsEstimates.

Usage

checkManualCountsEstimatesArguments(
  probeCounts,
  radius,
  height,
  volumeFracCorrection
)

Arguments

probeCounts	A matrix of manual spot counts with columns for probes and rows for nuclei
radius	The cells' nuclear radius (must be measured in same unit as height)
height	The section height (must be measured in same unit as radius)
volumeFracCorrection	The method used to correct for volume fraction (must be 'avg', 'max', or 'min'; defaults to 'max')

Value

Nothing if all checks are passed; otherwise throws an error or warning message

markowetzlab/frenchFISH documentation built on June 28, 2020, 8:18 p.m.