output_grn: Generate grn format regulatory relationships
In jiang-junyao/IReNA: IReNA

output_grn

R Documentation

Generate grn format regulatory relationships

Description

Generate grn format regulatory relationships

Usage

output_grn(regulatory_relationships)

Arguments

regulatory_relationships

regulatory relationships , columns should contain 'TF', 'TFSymbol', 'TFGroup', 'Target', 'TargetSymbol', 'TargetGroup' and 'Correlation'

Value

grn format regulatory relationships

Examples

load(system.file("extdata", "test_clustering.rda", package = "IReNA"))
Kmeans_cluster_Ens <- add_ENSID(test_clustering,Spec1='Hs')
motif1 <- Tranfac201803_Hs_MotifTFsF
regulatory_relationships <- get_cor(Kmeans_cluster_Ens,motif1,0.9)
grn <- output_grn(regulatory_relationships)

jiang-junyao/IReNA documentation built on Nov. 4, 2024, 8:29 p.m.