filter_regulation_fimo: Filter regulatory relationships according to binding motifs...
In jiang-junyao/IReNA: IReNA
filter_regulation_fimo R Documentation
Filter regulatory relationships according to binding motifs generated by fimo
Description
If ATAC-seq data is not available, binding motifs of target genes
can be used to filter regulatory relationships.
Usage
filter_regulation_fimo(fimo_regulation, regulatory_relationships)
Arguments
fimo_regulation
regulation database, you can download it from xxx, or
generate it by generate_fimo_regulation
regulatory_relationships
unfiltered regulatory_relationships, generated by
get_cor
jiang-junyao/IReNA documentation built on Nov. 4, 2024, 8:29 p.m.
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| filter_regulation_fimo | R Documentation |
Filter regulatory relationships according to binding motifs generated by fimo
Description
If ATAC-seq data is not available, binding motifs of target genes can be used to filter regulatory relationships.
Usage
filter_regulation_fimo(fimo_regulation, regulatory_relationships)
Arguments
fimo_regulation |
regulation database, you can download it from xxx, or
generate it by |
regulatory_relationships |
unfiltered regulatory_relationships, generated by
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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