get_pseudotime: Calculate pseudotime of cells
In jiang-junyao/IReNA: IReNA
get_pseudotime R Documentation
Calculate pseudotime of cells
Description
Use monocle to calculate the pseudotime and return a monocle object
Usage
get_pseudotime(seurat_object, reverse = FALSE, gene.use = NULL)
Arguments
seurat_object
seurat object
reverse
TRUE or FALSE, whether to reverse the pseudotime, default is TURE
gene.use
vector, indicating the variable genes to calculate pseudotime
Value
return monocle object which contain pseudotime
Examples
load(system.file("extdata", "test_seurat.rda", package = "IReNA"))
get_pseudotime(test_seurat)
jiang-junyao/IReNA documentation built on Nov. 4, 2024, 8:29 p.m.
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| get_pseudotime | R Documentation |
Calculate pseudotime of cells
Description
Use monocle to calculate the pseudotime and return a monocle object
Usage
get_pseudotime(seurat_object, reverse = FALSE, gene.use = NULL)
Arguments
seurat_object |
seurat object |
reverse |
TRUE or FALSE, whether to reverse the pseudotime, default is TURE |
gene.use |
vector, indicating the variable genes to calculate pseudotime |
Value
return monocle object which contain pseudotime
Examples
load(system.file("extdata", "test_seurat.rda", package = "IReNA"))
get_pseudotime(test_seurat)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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