getPfam: Get PFAM IDs by AptamerId

In graumannlab/readat: Functionality to Read and Manipulate SomaLogic ADAT files

Description

Gets the PFAM Ids and descriptions associated with SomaLogic aptamer IDs.

Usage

getPfam(aptamerIds = NULL, simplify = FALSE)

Arguments

aptamerIds	A character vector of SomaLogic aptamer IDs, or NULL to use all aptamer IDs.
simplify	Logical. Should the output be collapsed into a single data.frame?

Value

A list of data frames. The names of the list are the input SeqIds, and the data frame associated with that element contains:

EntrezGeneId

Character. EntrezGene IDs for the gene that produces the target protein.

PfamId

Character. PFAM ID for a property of the target protein.

PfamDescription

Character. Description of a PFAM protein property.

Examples

# Each AptamerId may have one, many, or zero associated PFAM descriptions
getPfam(c("2278-61", "4703-87", "4916-2"))

# Get everything in the 1310 and 1129 panels.
getPfam()

graumannlab/readat documentation built on May 16, 2020, 10:15 p.m.