getChromosomalPositions: Get Chromosomal Positions by AptamerId

In graumannlab/readat: Functionality to Read and Manipulate SomaLogic ADAT files

Description

Gets the chromosomal positions associated with SomaLogic aptamer IDs.

Usage

getChromosomalPositions(aptamerIds = NULL, simplify = FALSE)

Arguments

aptamerIds	A character vector of SomaLogic aptamer IDs, or NULL to use all aptamer IDs.
simplify	Logical. Should the output be collapsed into a single data.frame?

Value

A list of data frames. The names of the list are the input SeqIds, and the data frame associated with that element contains:

UniProtId

Character. UniProt ID for the protein target.

Chromsome

Character. Either '1' to '22' or 'X' . (Currently no 'Y' values.)

StartPosition

Integer. Distance in base pairs from the 5' end of the gene to the start of the protein.

EndPosition

Integer. Distance in base pairs from the 5' end of the gene to the end of the protein.

Examples

# Each AptamerId may have one, many, or zero associated chromosomal positions
getChromosomalPositions(c("2278-61", "4703-87_2", "4916-2"))

# Get everything in the 1310 and 1129 panels.
getChromosomalPositions()

graumannlab/readat documentation built on May 16, 2020, 10:15 p.m.