chromosomalPositions: Chromosomal Positions by SomaLogic AptamerId
In graumannlab/readat: Functionality to Read and Manipulate SomaLogic ADAT files
Description
A lookup of chromosomal positions by SomaLogic Aptamer ID.
Format
A GRangesList with the hg38 genome.
Each Apatmer ID has an element that is a GRanges
object with 3 metadata columns.
- AptamerId
Character, primary key. The identifier of the aptamer
sequence identified using SELEX. It consists of an SomaLogic SeqId truncated
at the underscore, to remove its sequence version number.
- UniProtId
Character. UniProt ID for the protein target.
- EntrezGeneId
Character. EntrezGene IDs for the gene that produces
the target protein.
Examples
1
graumannlab/readat documentation built on May 16, 2020, 10:15 p.m.
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Description
A lookup of chromosomal positions by SomaLogic Aptamer ID.
Format
A GRangesList with the hg38 genome.
Each Apatmer ID has an element that is a GRanges
object with 3 metadata columns.
- AptamerId
Character, primary key. The identifier of the aptamer sequence identified using SELEX. It consists of an SomaLogic SeqId truncated at the underscore, to remove its sequence version number.
- UniProtId
Character. UniProt ID for the protein target.
- EntrezGeneId
Character. EntrezGene IDs for the gene that produces the target protein.
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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