Files in graumannlab/readat
Functionality to Read and Manipulate SomaLogic ADAT files
.Rbuildignore
.gitignore
.project
DESCRIPTION
NAMESPACE
NEWS
R/SummarizedExperiment.R
R/checkIds.R
R/dataset-docs.R
R/defunct.R
R/extractSampleData.R
R/get-annotations.R
R/getSequencesWithLargestBetweenGroupVariation.R
R/list-utils.R
R/methods.R
R/read-sample-submision-input-files.R
R/readAdat.R
R/sfread.R
R/soma2eset.R
R/suppressSomeFeedback.R
README.md
appveyor.yml
data/aptamers.rda
data/chromosomalPositions.rda
data/ensembl.rda
data/goBiologicalProcess.rda
data/goCellularComponent.rda
data/goMolecularFunction.rda
data/keggDefinitions.rda
data/keggModules.rda
data/keggPathways.rda
data/pfam.rda
data/uniprotKeywords.rda
inst/CITATION
inst/extdata/PLASMA.1.1k.20151030.adat.zip
inst/extdata/PLASMA.1.3k.20151030.adat.zip
inst/extdata/SOMAscan_1.3k_1.1k_dilutions.csv
inst/extdata/comments.csv
inst/extdata/controls.csv
inst/extdata/samples.csv
inst/extdata/slides.csv
inst/push_to_bioconductor.txt
inst/scripts/backend.R
inst/scripts/create-aptamer-dataset.R
inst/scripts/create-chromosome-dataset.R
inst/scripts/create-ensembl-dataset.R
inst/scripts/create-go-dataset.R
inst/scripts/create-kegg-datasets.R
inst/scripts/create-pfam-dataset.R
inst/scripts/create-presubmission-datasets.R
inst/scripts/create-toy-adat-file.R
inst/scripts/create-uniprot-keywords-dataset.R
man/WideSomaLogicData.Rd
man/WideSomaLogicDataAttributes.Rd
man/aptamers.Rd
man/as.ExpressionSet.Rd
man/as.SummarizedExperiment.Rd
man/chromosomalPositions.Rd
man/colnamesStartWithSeqId.Rd
man/convertSeqIdToAptamer.Rd
man/createSampleSubmission.Rd
man/ensemblIds.Rd
man/extractSampleData.Rd
man/getChromosomalPositions.Rd
man/getEnsemblIds.Rd
man/getGoMolecularFunctions.Rd
man/getKeggDefinitions.Rd
man/getPfam.Rd
man/getSampleIdVar.Rd
man/getSequencesWithLargestBetweenGroupVariation.Rd
man/getUniProtKeywords.Rd
man/goMolecularFunction.Rd
man/isPass.Rd
man/isSomaEset.Rd
man/keggDefinitions.Rd
man/melt.WideSomaLogicData.Rd
man/orderPlatePosition.Rd
man/pfam.Rd
man/readAdat.Rd
man/readComments.Rd
man/readControls.Rd
man/readFirstChar.Rd
man/readSamples.Rd
man/readSlides.Rd
man/readat-defunct.Rd
man/sub-.WideSomaLogicData.Rd
man/uniprotKeywords.Rd
man/writeSampleSubmissionForm.Rd
readat.Rproj
tests/testthat.R
tests/testthat/hgnc_gene_symbols.rds
tests/testthat/test-checkIds.R
tests/testthat/test-methods.R
tests/testthat/test-readAdat.R
vignettes/introduction.Rmd
