frankkramer-lab/RCX
R package implementing the Cytoscape Exchange (CX) format

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frankkramer-lab/RCX: R package implementing the Cytoscape Exchange (CX) format
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API

API for frankkramer-lab/RCX
R package implementing the Cytoscape Exchange (CX) format

Global functions
.addAspectNameToJson Man page Source code
.addAttributeData Man page Source code
.addClass Man page
.addClass<- Man page
.aspectClass Man page Source code
.checkAllClass Man page Source code
.checkAllNumeric Man page Source code
.checkAllNumericOrInDict Man page Source code
.checkAnyNotNull Man page Source code
.checkBContainsAllA Man page Source code
.checkCharacter Man page Source code
.checkClass Man page Source code
.checkClassOneOf Man page Source code
.checkIsId Man page Source code
.checkIsUniqueId Man page Source code
.checkList Man page Source code
.checkLogical Man page Source code
.checkNamed Man page Source code
.checkNamedCharacter Man page Source code
.checkNamedList Man page Source code
.checkNamedLogical Man page Source code
.checkNamedNumeric Man page Source code
.checkNoNa Man page Source code
.checkNonNeg Man page Source code
.checkNumeric Man page Source code
.checkRefPresent Man page Source code
.checkRefs Man page Source code
.checkSameLength Man page Source code
.checkUnique Man page Source code
.checkUniqueDF Man page Source code
.convert2json Man page Source code
.convert2json.character Man page Source code
.convert2json.data.frame Man page Source code
.convert2json.integer Man page
.convert2json.list Man page Source code
.convert2json.logical Man page Source code
.convert2json.numeric Man page Source code
.convertDataTypes Man page Source code
.convertRawList Man page Source code
.convertValues Man page Source code
.createAttributeAspect Man page Source code
.createCyVpPorD Man page Source code
.elementsBContainsAllA Man page Source code
.elementsInDict Man page Source code
.elementsUnique Man page Source code
.elementsUniqueDF Man page Source code
.errorCodes Man page Source code
.filterBy Man page Source code
.format Man page
.formatComma Man page Source code
.formatData Man page Source code
.formatLog Man page Source code
.formatO Man page Source code
.formatParams Man page Source code
.formatQuote Man page Source code
.infer Man page
.inferDataType Man page Source code
.inferIsList Man page Source code
.json2RDataType Man page Source code
.jsonL Man page Source code
.jsonV Man page Source code
.listAllNumeric Man page Source code
.listAllNumericOrInDict Man page Source code
.log Man page Source code
.markAttributeColumn<- Man page
.markRefColumn<- Man page
.markReqRefColumn<- Man page
.mergeAttributesAspect Man page Source code
.mergeIdAspect Man page Source code
.modClass Man page
.onLoad Source code
.paramAnyNotNull Man page Source code
.paramClass Man page Source code
.paramIsOptionalId Man page Source code
.paramNamed Man page Source code
.paramNoNa Man page Source code
.paramNonNeg Man page Source code
.pasteC Man page Source code
.removeClass Man page
.removeClass<- Man page
.renameDF Man page Source code
.stop Man page Source code
.summaryAspect Man page Source code
.test_AllowedColumnsPresent Man page Source code
.test_AspectExist Man page Source code
.test_AtLeastOneColumnPresent Man page Source code
.test_AtLeastOneElementPresent Man page Source code
.test_ContainsNA Man page Source code
.test_DataTypeColumn Man page Source code
.test_ElementIsList Man page Source code
.test_ElementIsNumeric Man page Source code
.test_IdsInAspect Man page Source code
.test_IsCVPclass Man page Source code
.test_IsCharacter Man page Source code
.test_IsClass Man page Source code
.test_IsList Man page Source code
.test_IsLogical Man page Source code
.test_IsNamedList Man page Source code
.test_IsNumeric Man page Source code
.test_IsPos Man page Source code
.test_IsUnique Man page Source code
.test_IsUniqueInLists Man page Source code
.test_ListAllCharacter Man page Source code
.test_ListAllContainsNA Man page Source code
.test_ListAllNumeric Man page Source code
.test_ListAllNumericOrInDict Man page Source code
.test_ListAllOfClass Man page Source code
.test_ListAllUnique Man page Source code
.test_ListAllUniqueInLists Man page Source code
.test_ListAllowedColumnsPresent Man page Source code
.test_ListOfCVPclass Man page Source code
.test_ListRequiredColumnsPresent Man page Source code
.test_NoMergeColumn Man page Source code
.test_OneNodePresent Man page Source code
.test_RequiredColumnsPresent Man page Source code
.test_ValuesInSet Man page Source code
.transformListLength<- Man page
.transformVLD Man page Source code
.validateAttributesAspect Man page Source code
.validateCyVisualPropertyPandD Man page Source code
.validateListOfCyVisualPropertyPandD Man page Source code
CartesianLayout Man page
Convert-Names-and-Classes Man page
CyGroups Man page
CyHiddenAttributes Man page
CyNetworkRelations Man page
CySubNetworks Man page
CyTableColumn Man page
CyVisualProperties Man page
CyVisualProperty Man page
CyVisualPropertyDependencies Man page
CyVisualPropertyMappings Man page
CyVisualPropertyProperties Man page
EdgeAttributes Man page
Edges Man page
Igraph Man page
Meta-data Man page
NetworkAttributes Man page
NodeAttributes Man page
Nodes Man page
RCX Man page
RCX-object Man page
`.markAttributeColumn<-` Source code
`.markRefColumn<-` Source code
`.markReqRefColumn<-` Source code
`.transformListLength<-` Source code
aspectClass2Name Man page Source code
aspectClasses Man page
aspectName2Class Man page Source code
checks Man page
convert-data-types-and-values Man page
convert2json Man page
countElements Man page Source code
countElements.CyVisualPropertiesAspect Man page Source code
countElements.MetaDataAspect Man page Source code
countElements.RCX Man page Source code
countElements.default Man page Source code
createCartesianLayout Man page Source code
createCyGroups Man page Source code
createCyHiddenAttributes Man page Source code
createCyNetworkRelations Man page Source code
createCySubNetworks Man page Source code
createCyTableColumn Man page Source code
createCyVisualProperties Man page Source code
createCyVisualProperty Man page Source code
createCyVisualPropertyDependencies Man page Source code
createCyVisualPropertyMappings Man page Source code
createCyVisualPropertyProperties Man page Source code
createEdgeAttributes Man page Source code
createEdges Man page Source code
createNetworkAttributes Man page Source code
createNodeAttributes Man page Source code
createNodes Man page Source code
createRCX Man page Source code
custom-print Man page
dot_test Man page
fromGraphNEL Man page Source code
fromIgraph Man page Source code
getAspectClasses Man page Source code
getAttributeData Source code
getCyVisualProperty Man page Source code
graphNEL Man page
hasIds Man page
hasIds.CyGroupsAspect Man page
hasIds.CySubNetworksAspect Man page
hasIds.EdgesAspect Man page
hasIds.NodesAspect Man page
hasIds.default Man page
idProperty Man page
idProperty.CyGroupsAspect Man page
idProperty.CySubNetworksAspect Man page
idProperty.EdgesAspect Man page
idProperty.NodesAspect Man page
idProperty.default Man page
jsonToRCX Man page Source code
jsonToRCX.cartesianLayout Man page Source code
jsonToRCX.cyGroups Man page Source code
jsonToRCX.cyHiddenAttributes Man page Source code
jsonToRCX.cyNetworkRelations Man page Source code
jsonToRCX.cySubNetworks Man page Source code
jsonToRCX.cyTableColumn Man page Source code
jsonToRCX.cyVisualProperties Man page Source code
jsonToRCX.default Man page Source code
jsonToRCX.edgeAttributes Man page Source code
jsonToRCX.edges Man page Source code
jsonToRCX.metaData Man page Source code
jsonToRCX.networkAttributes Man page Source code
jsonToRCX.nodeAttributes Man page Source code
jsonToRCX.nodes Man page Source code
jsonToRCX.numberVerification Man page Source code
jsonToRCX.status Man page Source code
markAttributeColumn Man page
markRefColumn Man page
maxId Man page Source code
maxId.RCX Man page Source code
maxId.default Man page Source code
parseJSON Man page Source code
print.CartesianLayoutAspect Man page Source code
print.CyGroupsAspect Man page Source code
print.CyHiddenAttributesAspect Man page Source code
print.CyNetworkRelationsAspect Man page Source code
print.CySubNetworksAspect Man page Source code
print.CyTableColumnAspect Man page Source code
print.CyVisualPropertiesAspect Man page Source code
print.CyVisualProperty Man page Source code
print.CyVisualPropertyDependencies Man page Source code
print.CyVisualPropertyMappings Man page Source code
print.CyVisualPropertyProperties Man page Source code
print.EdgeAttributesAspect Man page Source code
print.EdgesAspect Man page Source code
print.MetaDataAspect Man page Source code
print.NetworkAttributesAspect Man page Source code
print.NodeAttributesAspect Man page Source code
print.NodesAspect Man page Source code
print.RCX Man page Source code
processCX Man page Source code
rcxToJson Man page Source code
rcxToJson.CartesianLayoutAspect Man page Source code
rcxToJson.CyGroupsAspect Man page Source code
rcxToJson.CyHiddenAttributesAspect Man page Source code
rcxToJson.CyNetworkRelationsAspect Man page Source code
rcxToJson.CySubNetworksAspect Man page Source code
rcxToJson.CyTableColumnAspect Man page Source code
rcxToJson.CyVisualPropertiesAspect Man page Source code
rcxToJson.CyVisualProperty Man page Source code
rcxToJson.CyVisualPropertyDependencies Man page Source code
rcxToJson.CyVisualPropertyMappings Man page Source code
rcxToJson.CyVisualPropertyProperties Man page Source code
rcxToJson.EdgeAttributesAspect Man page Source code
rcxToJson.EdgesAspect Man page Source code
rcxToJson.MetaDataAspect Man page Source code
rcxToJson.NetworkAttributesAspect Man page Source code
rcxToJson.NodeAttributesAspect Man page Source code
rcxToJson.NodesAspect Man page Source code
rcxToJson.default Man page Source code
readCX Man page Source code
readJSON Man page Source code
referredBy Man page
refersTo Man page
refersTo.CartesianLayoutAspect Man page
refersTo.CyGroupsAspect Man page
refersTo.CySubNetworksAspect Man page
refersTo.CyVisualPropertiesAspect Man page
refersTo.EdgeAttributesAspect Man page
refersTo.EdgesAspect Man page
refersTo.NodeAttributesAspect Man page
refersTo.default Man page
setExtension Man page Source code
subAspectClasses Man page
summary Man page
summary.AspectAttributeColumn Man page Source code
summary.AspectIdColumn Man page Source code
summary.AspectListLengthColumn Man page Source code
summary.AspectRefColumn Man page Source code
summary.AspectReqRefColumn Man page Source code
summary.AspectValueColumn Man page Source code
summary.CartesianLayoutAspect Man page Source code
summary.CyGroupsAspect Man page Source code
summary.CyHiddenAttributesAspect Man page
summary.CyNetworkRelationsAspect Man page Source code
summary.CySubNetworksAspect Man page Source code
summary.CyTableColumnAspect Man page Source code
summary.CyVisualPropertiesAspect Man page Source code
summary.CyVisualProperty Man page Source code
summary.EdgeAttributesAspect Man page
summary.EdgesAspect Man page Source code
summary.MetaDataAspect Man page Source code
summary.NetworkAttributesAspect Man page Source code
summary.NodeAttributesAspect Man page Source code
summary.NodesAspect Man page Source code
summary.RCX Man page Source code
toCX Man page Source code
toGraphNEL Man page Source code
toIgraph Man page Source code
updateAspectClasses Man page Source code
updateCartesianLayout Man page Source code
updateCartesianLayout.CartesianLayoutAspect Man page Source code
updateCartesianLayout.RCX Man page Source code
updateCyGroups Man page Source code
updateCyGroups.CyGroupsAspect Man page Source code
updateCyGroups.RCX Man page Source code
updateCyHiddenAttributes Man page Source code
updateCyHiddenAttributes.CyHiddenAttributesAspect Man page Source code
updateCyHiddenAttributes.RCX Man page Source code
updateCyNetworkRelations Man page Source code
updateCyNetworkRelations.CyNetworkRelationsAspect Man page Source code
updateCyNetworkRelations.RCX Man page Source code
updateCySubNetworks Man page Source code
updateCySubNetworks.CySubNetworksAspect Man page Source code
updateCySubNetworks.RCX Man page Source code
updateCyTableColumn Man page Source code
updateCyTableColumn.CyTableColumnAspect Man page Source code
updateCyTableColumn.RCX Man page Source code
updateCyVisualProperties Man page Source code
updateCyVisualProperties.CyVisualPropertiesAspect Man page Source code
updateCyVisualProperties.RCX Man page Source code
updateCyVisualProperty Man page Source code
updateCyVisualProperty.CyVisualProperty Man page Source code
updateCyVisualProperty.CyVisualPropertyDependencies Man page Source code
updateCyVisualProperty.CyVisualPropertyMappings Man page Source code
updateCyVisualProperty.CyVisualPropertyProperties Man page Source code
updateEdgeAttributes Man page Source code
updateEdgeAttributes.EdgeAttributesAspect Man page Source code
updateEdgeAttributes.RCX Man page Source code
updateEdges Man page Source code
updateEdges.EdgesAspect Man page Source code
updateEdges.RCX Man page Source code
updateMetaData Man page Source code
updateMetaData.RCX Man page Source code
updateMetaData.default Man page Source code
updateMetaDataProperties Man page Source code
updateNetworkAttributes Man page Source code
updateNetworkAttributes.NetworkAttributesAspect Man page Source code
updateNetworkAttributes.RCX Man page Source code
updateNodeAttributes Man page Source code
updateNodeAttributes.NodeAttributesAspect Man page Source code
updateNodeAttributes.RCX Man page Source code
updateNodes Man page Source code
updateNodes.NodesAspect Man page Source code
updateNodes.RCX Man page Source code
validate Man page Source code
validate.CartesianLayoutAspect Man page Source code
validate.CyGroupsAspect Man page Source code
validate.CyHiddenAttributesAspect Man page Source code
validate.CyNetworkRelationsAspect Man page Source code
validate.CySubNetworksAspect Man page Source code
validate.CyTableColumnAspect Man page Source code
validate.CyVisualPropertiesAspect Man page Source code
validate.CyVisualProperty Man page Source code
validate.CyVisualPropertyDependencies Man page Source code
validate.CyVisualPropertyMappings Man page Source code
validate.CyVisualPropertyProperties Man page Source code
validate.EdgeAttributesAspect Man page Source code
validate.EdgesAspect Man page Source code
validate.NetworkAttributesAspect Man page Source code
validate.NodeAttributesAspect Man page Source code
validate.NodesAspect Man page Source code
validate.RCX Man page Source code
validate.default Man page Source code
visualize Man page Source code
visualize.CX Man page Source code
visualize.RCX Man page Source code
writeCX Man page Source code
writeCX.CX Man page Source code
writeCX.RCX Man page Source code
writeHTML Man page Source code
writeHTML.CX Man page Source code
writeHTML.RCX Man page Source code
frankkramer-lab/RCX documentation built on Feb. 4, 2023, 5:12 p.m.

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