Files in cole-trapnell-lab/monocle3
Clustering, Differential Expression, and Trajectory Analysis for Single-Cell RNA-Seq

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00travis.yml

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

NEWS.md R/RcppExports.R R/alignment.R R/cell_data_set.R R/cluster_cells.R R/cluster_genes.R R/expr_models.R R/find_markers.R R/generics.R R/graph_test.R R/identity.R R/io.R R/label_transfer.R R/learn_graph.R R/load_cellranger_data.R R/methods-cell_data_set.R R/nearest_neighbors.R R/order_cells.R R/plotting.R R/preprocess_cds.R R/projection.R R/reduce_dimensions.R R/select_cells.R R/utils.R R/zzz.R README.md code-of-conduct.md examples/c_elegans_L2.R examples/c_elegans_embryo.R examples/website_script.R

inst/CITATION

inst/WORDLIST

inst/extdata/barcodes_c2h0.txt

inst/extdata/cell_ranger_3/outs/filtered_feature_bc_matrix/barcodes.tsv.gz

inst/extdata/cell_ranger_3/outs/filtered_feature_bc_matrix/features.tsv.gz

inst/extdata/cell_ranger_3/outs/filtered_feature_bc_matrix/matrix.mtx.gz

inst/extdata/features_c3h0.txt

inst/extdata/lung_exprs_data.RData

inst/extdata/lung_feature_data.RData

inst/extdata/lung_phenotype_data.RData

inst/extdata/matrix.mtx.gz

inst/extdata/small_a549_dex_exprs.rda

inst/extdata/small_a549_dex_fdata.rda

inst/extdata/small_a549_dex_pdata.rda

inst/extdata/worm_embryo/NOTES

inst/extdata/worm_embryo/worm_embryo_coldata.rds

inst/extdata/worm_embryo/worm_embryo_expression_matrix.rds

inst/extdata/worm_embryo/worm_embryo_rowdata.rds

inst/extdata/worm_l2/NOTES

inst/extdata/worm_l2/worm_l2_coldata.rds

inst/extdata/worm_l2/worm_l2_expression_matrix.rds

inst/extdata/worm_l2/worm_l2_rowdata.rds

inst/louvain.py

monocle3.Rproj

src/.gitignore

src/Makevars

src/RcppExports.cpp

src/clustering.cpp

src/docker/NOTES

tests/spelling.R

tests/testdata/MatrixMarket/barcodes_c1h0.txt

tests/testdata/MatrixMarket/barcodes_c1h1.txt

tests/testdata/MatrixMarket/barcodes_c3h0.txt

tests/testdata/MatrixMarket/barcodes_c3h2.txt

tests/testdata/MatrixMarket/barcodes_c3h3.txt

tests/testdata/MatrixMarket/features_c1h0.txt

tests/testdata/MatrixMarket/features_c1h1.txt

tests/testdata/MatrixMarket/features_c2h1.txt

tests/testdata/MatrixMarket/features_c3h0.txt

tests/testdata/MatrixMarket/features_c3h2.txt

tests/testdata/MatrixMarket/features_c3h2q.txt

tests/testdata/MatrixMarket/features_c3h3.txt

tests/testdata/MatrixMarket/matrix.mtx.gz

tests/testdata/cr2.0/outs/filtered_gene_bc_matrices/hg19/barcodes.tsv

tests/testdata/cr2.0/outs/filtered_gene_bc_matrices/hg19/genes.tsv

tests/testdata/cr2.0/outs/filtered_gene_bc_matrices/hg19/matrix.mtx

tests/testdata/cr3.0/outs/filtered_feature_bc_matrix/barcodes.tsv.gz

tests/testdata/cr3.0/outs/filtered_feature_bc_matrix/features.tsv.gz

tests/testdata/cr3.0/outs/filtered_feature_bc_matrix/matrix.mtx.gz

vignettes/.gitignore

vignettes/monocle3-vignette.Rnw

vignettes/whbiocvignette.sty

cole-trapnell-lab/monocle3 documentation built on April 7, 2024, 9:24 p.m.

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cole-trapnell-lab/monocle3
Clustering, Differential Expression, and Trajectory Analysis for Single-Cell RNA-Seq

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Clustering, Differential Expression, and Trajectory Analysis for Single-Cell RNA-Seq

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cole-trapnell-lab/monocle3 Clustering, Differential Expression, and Trajectory Analysis for Single-Cell RNA-Seq

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cole-trapnell-lab/monocle3
Clustering, Differential Expression, and Trajectory Analysis for Single-Cell RNA-Seq

Files in cole-trapnell-lab/monocle3
Clustering, Differential Expression, and Trajectory Analysis for Single-Cell RNA-Seq