load_mtx_data: Load data from matrix market format

In cole-trapnell-lab/monocle3: Clustering, Differential Expression, and Trajectory Analysis for Single-Cell RNA-Seq

Load data from matrix market format

Description

Load data from matrix market format

Usage

load_mtx_data(mat_path, gene_anno_path, cell_anno_path, umi_cutoff = 100)

Arguments

mat_path	Path to the .mtx matrix market file.
gene_anno_path	Path to gene annotation file.
cell_anno_path	Path to cell annotation file.
umi_cutoff	UMI per cell cutoff, default is 100.

Value

cds object

Examples

  
    pmat<-system.file("extdata", "matrix.mtx.gz", package = "monocle3")
    prow<-system.file("extdata", "features_c3h0.txt", package = "monocle3")
    pcol<-system.file("extdata", "barcodes_c2h0.txt", package = "monocle3")
    cds <- load_mtx_data( pmat, prow, pcol)
  

cole-trapnell-lab/monocle3 documentation built on April 7, 2024, 9:24 p.m.