choose_cells: Choose cells interactively to subset a cds

In cole-trapnell-lab/monocle3: Clustering, Differential Expression, and Trajectory Analysis for Single-Cell RNA-Seq

Choose cells interactively to subset a cds

Description

Choose cells interactively to subset a cds

Usage

choose_cells(
  cds,
  reduction_method = c("UMAP", "tSNE", "PCA", "Aligned"),
  clear_cds = FALSE,
  return_list = FALSE
)

Arguments

cds	CDS object to subset
reduction_method	The reduction method to plot while choosing cells.
clear_cds	Logical, clear CDS slots before returning. After clearing the cds, re-run processing from preprocess_cds(), ... Default is FALSE.
return_list	Logical, return a list of cells instead of a subsetted CDS object.

Value

A subset CDS object. If return_list = FALSE, a list of cell names.

cole-trapnell-lab/monocle3 documentation built on April 7, 2024, 9:24 p.m.