R/PlotMixture.R

In antagomir/netresponse: Functional Network Analysis

#' @title Plot mixtures
#' @description Plot mixtures.
#' @param x data vector
#' @param qofz Mode assignment probabilities for each sample. Samples x modes.
#' @param binwidth binwidth for histogram
#' @param xlab.text xlab.text
#' @param ylab.text ylab.text
#' @param title.text title.text
#' @return Used for its side-effects
#' @author Leo Lahti \email{leo.lahti@@iki.fi}
#' @references See citation('netresponse') for citation details.
#' @keywords utilities
#' @examples # PlotMixture(x, qofz)
PlotMixture <- function(x, qofz, binwidth = 0.05, xlab.text = NULL, ylab.text = NULL, 
    title.text = NULL) {
    
    # hard sample clusters
    sms <- apply(qofz, 1, which.max)
    
    x <- unname(x)
    df <- data.frame(list(x = x))
    df$mode <- factor(sms)
    
    # Histogram and density plot
    pg <- ggplot(df, aes(x = x)) +
        geom_histogram(aes(fill = mode), binwidth = binwidth) +
        theme_bw() +
        labs(x = xlab.text, y = ylab.text, title = title.text)
    
    pg
    
}