plot_associations: Association strength between category labels and responses.

In antagomir/netresponse: Functional Network Analysis

Association strength between category labels and responses.

Description

Plot association strength between user-defined category labels and responses in a selected subnetwork. Associations are showm in terms -log10(p) enrichment values for the annotation categories for the responses within the specified subnetwork. No correction for multiple testing.

Usage

plot_associations(
  x,
  subnet.id,
  labels,
  method = "hypergeometric",
  mode = "group.by.classes",
  ...
)

Arguments

x	NetResponseModel object
subnet.id	Subnetwork.
labels	Factor. Labels for the data samples. Name by samples, or provide in the same order as in the original data.
method	Method to calculate association strength.
mode	group.by.responses or group.by.classes: indicate barplot grouping type.
...	Other arguments to be passed for plot_

Value

Used for side effect (plotting).

Author(s)

Leo Lahti [e-mail]

References

See citation('netresponse').

See Also

plot_responses

Examples

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antagomir/netresponse documentation built on March 30, 2023, 7:24 a.m.