model.stats: model.stats

In antagomir/netresponse: Functional Network Analysis

model.stats

Description

Subnetwork statistics: size and number of distinct responses for each subnet.

Usage

model.stats(models)

Arguments

models

NetResponse object or list of models

Value

A 'subnetworks x properties' data frame containing the following elements.

subnet.size:	Vector of subnetwork sizes.
subnet.responses:	Vector giving the number of responses in each subnetwork.

Author(s)

Leo Lahti <[e-mail]>

References

Leo Lahti et al.: Global modeling of transcriptional responses in interaction networks. Bioinformatics (2010). See citation('netresponse') for reference details.

Examples

# Load a pre-calculated netresponse model obtained with 
# model <- detect.responses(toydata$emat, toydata$netw, verbose = FALSE)
data(toydata)        
# Calculate summary statistics for the model
stat <- model.stats(toydata$model)

antagomir/netresponse documentation built on March 30, 2023, 7:24 a.m.