selectLandmark: selectLandmark

In aertslab/ScoMAP: ScoMAP: Single-Cell Omics Mapping into spatial Axes using Pseudotemporal ordering

Description

Select landmark on the virtual map

Usage

selectLandmark(VM, reference_group, type, landmark_name)

Arguments

VM	Virtual map data frame
reference_group	Group in which landmark will be located. The reference group must be included in cluster_annot
type	Whether the landmark will be the central position on the cluster ('centroid'), the left-most cells ('vertical_line') or the upper-most cells ('horizontal-line')
landmark_name	Name assigned to the landmark

Value

A virtual map data.frame containing an additional column called is.landmark with the corresponding values

Examples

VM <- selectLandmark(VM, reference_group='Antenna_A3_Arista', type='centroid', landmark_name='Antenna')
VM <- selectLandmark(VM, reference_group='MF_Morphogenetic_Furrow', type='vertical_line', landmark_name='Eye')

aertslab/ScoMAP documentation built on Oct. 8, 2021, 1:15 a.m.