plotVMFeatures: plotVMFeatures

In aertslab/ScoMAP: ScoMAP: Single-Cell Omics Mapping into spatial Axes using Pseudotemporal ordering

Description

Plot omics data into the virtual template.

Usage

plotVMFeatures(VM, omics_mat, features, thr = 0)

Arguments

VM	Virtual map data frame, after running mapCells()
omics_mat	Matrix containing features as rows (e.g. genes, regions) and real cells as columns.
features	Vector with the names of features to be plotted on the virtual template. Features will be assigned to the corresponding RGB channel depending on the order.
thr	Threshold (between 0 and 1) to color cells with low feature value in grey. Default: 0.

Examples

PlotVMFeatures(VM, dgem, features=c('ato', 'hth', 'Optix'))

aertslab/ScoMAP documentation built on Oct. 8, 2021, 1:15 a.m.