readTemplateFromLoom: readTemplateFromLoom
In aertslab/ScoMAP: ScoMAP: Single-Cell Omics Mapping into spatial Axes using Pseudotemporal ordering
Description
Usage
Arguments
Value
Examples
Description
Read template from a loom file with coordinates as embeddings and cluster annotation as metadata.
Usage
1
readTemplateFromLoom(loom_path, cluster_variable, embedding_name)
Arguments
loom_path
Path to loom file
cluster_variable
Name of the variable to use as cluster annotation
embedding_name
Name of the embedding to use for spatial coordinates
Value
A virtual map data.frame containing the virtual cell coordinates and assigned spatial cluster
Examples
1
virtualTemplate <- readTemplateFromLoom (loom_path, cluster_variable, embedding_name)
aertslab/ScoMAP documentation built on Oct. 8, 2021, 1:15 a.m.
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Description Usage Arguments Value Examples
Description
Read template from a loom file with coordinates as embeddings and cluster annotation as metadata.
Usage
1 | readTemplateFromLoom(loom_path, cluster_variable, embedding_name)
|
Arguments
loom_path |
Path to loom file |
cluster_variable |
Name of the variable to use as cluster annotation |
embedding_name |
Name of the embedding to use for spatial coordinates |
Value
A virtual map data.frame containing the virtual cell coordinates and assigned spatial cluster
Examples
1 | virtualTemplate <- readTemplateFromLoom (loom_path, cluster_variable, embedding_name)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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