VM_loom: VM_loom

In aertslab/ScoMAP: ScoMAP: Single-Cell Omics Mapping into spatial Axes using Pseudotemporal ordering

Description

Generates a minimal loom file to visualize data on SCope (http://scope.aertslab.org).

Usage

VM_loom(VM, omics_mat, loom_path, genome)

Arguments

VM	Virtual map data frame, after running mapCells()
omics_mat	Matrix containing features as rows (e.g. genes, regions) and real cells as columns.
loom_path	Path where the loom file will be generated
genome	Genome version to which data belongs

Examples

VM_loom(VM, dgem, loom_path='VM.loom', genome='dm6')

aertslab/ScoMAP documentation built on Oct. 8, 2021, 1:15 a.m.