aertslab/ScoMAP: ScoMAP: Single-Cell Omics Mapping into spatial Axes using Pseudotemporal ordering

ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells. These virtual cells may be organized on a template that resembles the tissue, or into an abstract space (e.g. when cell types are not spatially located). ScoMAP also includes functionalities to derive enhancer-to-gene relationships from the virtual template when mapping both single-cell transcriptomic and epigenomic data into the virtual cells.

install.packages("remotes")
remotes::install_github("aertslab/ScoMAP")