estDisp: Estimate overdispersion parameter of a beta-binomial

In Wancen/airpart: Differential cell-type-specific allelic imbalance

Estimate overdispersion parameter of a beta-binomial

Description

Estimate overdispersion parameter of a beta-binomial

Usage

estDisp(sce, genecluster, type = c("plot", "values"))

Arguments

sce	SingleCellExperiment with a1 matrix and counts
genecluster	the gene cluster for which to estimate the over-dispersion parameter. Default is the cluster with the most cells
type	whether to output the over-dispersion estimates as a plot or a value

Value

A ggplot object of the dispersion estimates over the mean, or a data.frame of the mean and dispersion estimates (theta)

Examples

sce <- makeSimulatedData()
sce <- preprocess(sce)
sce <- geneCluster(sce, G = seq_len(4))
estDisp(sce, genecluster = 1)

Wancen/airpart documentation built on March 12, 2023, 11:53 a.m.