consensusPart: Consensus Partitions

In Wancen/airpart: Differential cell-type-specific allelic imbalance

Consensus Partitions

Description

Derive consensus partitions of an ensemble fused lasso partitions.

Usage

consensusPart(sce)

Arguments

sce	SingleCellExperiment

Value

A matrix grouping factor partition is replaced in metadata. Consensus Partation also stored in colData"part".

Examples

library(smurf)
sce <- makeSimulatedData()
sce <- preprocess(sce)
sce <- geneCluster(sce, G = 1:4)
f <- ratio ~ p(x, pen = "gflasso") # formula for the GFL
sce_sub <- fusedLasso(sce,
  formula = f, model = "binomial", genecluster = 1,
  niter = 2, ncores = 2, se.rule.nct = 3
)
sce_sub <- consensusPart(sce_sub)

Wancen/airpart documentation built on March 12, 2023, 11:53 a.m.