shiftCountsOne: Add one to all counts in an expression matrix

In Nanostring-Biostats/GeomxTools: NanoString GeoMx Tools

Add one to all counts in an expression matrix

Description

Add one to all counts in an expression matrix

Usage

shiftCountsOne(object, elt = "exprs", useDALogic = FALSE)

Arguments

object	name of the NanoStringGeoMxSet object
elt	expression matrix element in assayDataElement to shift all counts by
useDALogic	boolean to use the same logic in DA (impute 0s to 1s) or set to FALSE to shift all counts by 1

Value

object of NanoStringGeoMxSet class

Examples

datadir <- system.file("extdata", "DSP_NGS_Example_Data",
                       package="GeomxTools")
demoData <- readRDS(file.path(datadir, "/demoData.rds"))
shiftCountsOne(demoData)

Nanostring-Biostats/GeomxTools documentation built on Sept. 24, 2024, 4:51 p.m.