readDccFile: Read DCC File

In Nanostring-Biostats/GeomxTools: NanoString GeoMx Tools

Read DCC File

Description

Read a NanoString GeoMx Digital Count Conversion (DCC) file.

Usage

readDccFile(file)

Arguments

file	A character string containing the path to the DCC file.

Value

A list object with two elements:

"Header"	a data.frame object containing the protocol and sequencing information.
"Code_Summary"	a data.frame object containing the target probe counts.

Author(s)

Zhi Yang & Nicole Ortogero

See Also

readNanoStringGeoMxSet

Examples

datadir <- system.file("extdata", "DSP_NGS_Example_Data",
                       package="GeomxTools")
dccFiles <- dir(datadir, pattern=".dcc$", full.names=TRUE)
dccData <- sapply(dccFiles[1:10], readDccFile, simplify = FALSE)

Nanostring-Biostats/GeomxTools documentation built on Sept. 24, 2024, 4:51 p.m.