qcProteinSignalNames: Generate list of proteins ordered by SNR

In Nanostring-Biostats/GeomxTools: NanoString GeoMx Tools

Generate list of proteins ordered by SNR

Description

For use with protein data ONLY.

Usage

qcProteinSignalNames(object, neg.names)

Arguments

object	name of the object class to subset NanoStringGeoMxSet, use the NanoStringGeoMxSet class
neg.names	names of IgGs, if NULL IgGs will be detected automatically

Value

protein names in increasing SNR order

Examples

proteinData <- readRDS(file= system.file("extdata","DSP_Proteogenomics_Example_Data", 
"proteinData.rds", package = "GeomxTools"))

igg.names <- iggNames(proteinData)

proteinOrder <- qcProteinSignalNames(object = proteinData, neg.names = igg.names)

Nanostring-Biostats/GeomxTools documentation built on Sept. 24, 2024, 4:51 p.m.