aggregateCounts: Aggregate probe counts to target level for feature data
In Nanostring-Biostats/GeomxTools: NanoString GeoMx Tools
View source: R/NanoStringGeoMxSet-aggregate.R
aggregateCounts R Documentation
Aggregate probe counts to target level for feature data
Description
Aggregate probe counts to target level for feature data
Usage
aggregateCounts(object, FUN = ngeoMean)
Arguments
object
name of the NanoStringGeoMxSet object to aggregate
FUN
function to use for count aggregation
Value
a NanoStringGeoMxSet object with targets as features
Examples
datadir <- system.file("extdata", "DSP_NGS_Example_Data",
package="GeomxTools")
demoData <- readRDS(file.path(datadir, "/demoData.rds"))
targetGeoMxSet <- aggregateCounts(demoData[,1:10])
Nanostring-Biostats/GeomxTools documentation built on Sept. 24, 2024, 4:51 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/NanoStringGeoMxSet-aggregate.R
| aggregateCounts | R Documentation |
Aggregate probe counts to target level for feature data
Description
Aggregate probe counts to target level for feature data
Usage
aggregateCounts(object, FUN = ngeoMean)
Arguments
object |
name of the NanoStringGeoMxSet object to aggregate |
FUN |
function to use for count aggregation |
Value
a NanoStringGeoMxSet object with targets as features
Examples
datadir <- system.file("extdata", "DSP_NGS_Example_Data",
package="GeomxTools")
demoData <- readRDS(file.path(datadir, "/demoData.rds"))
targetGeoMxSet <- aggregateCounts(demoData[,1:10])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.