MoseleyBioinformaticsLab/categoryCompare2
Meta-Analysis of High-Throughput Experiments Using Feature Annotations

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150
Source code
23
Man pages
67
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MoseleyBioinformaticsLab/categoryCompare2: Meta-Analysis of High-Throughput Experiments Using Feature Annotations
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API

API for MoseleyBioinformaticsLab/categoryCompare2
Meta-Analysis of High-Throughput Experiments Using Feature Annotations

Global functions
.annotation_combinations Source code
.combine_annotations Source code
.combine_enrichments Source code
.combine_enrichments_multiple Source code
.combine_enrichments_single Source code
.extract_statistics_combined_enrichment Source code
.extract_statistics_statistical_results Source code
.generate_annotation_graph Source code
.generate_table Source code
.get_significant_combined_enrichment Source code
.get_significant_stat_results Source code
.remove_edges_ccgraph Source code
.remove_edges_cw Source code
add_data_to_graph Man page Source code
add_tooltip Man page Source code
annotation Man page Source code
annotation_2_json Man page Source code
annotation_combinations Man page
annotation_combinations,cc_graph-method Man page
annotation_combinations,significant_annotations-method Man page
annotation_gene_table Man page Source code
assign_colors Man page Source code
assign_communities Man page Source code
assign_features Source code
base64_encode_images Source code
binomial_basic Man page Source code
binomial_feature_enrichment Man page Source code
binomial_features-class Man page
binomial_result Man page
binomial_result-class Man page
categoryCompare2 Man page
cc_graph Man page Source code
check_is_positive_integer Source code
check_package_installed Source code
combine_annotation_features Man page Source code
combine_annotations Man page
combine_annotations,list-method Man page
combine_enrichments Man page
combine_enrichments,enriched_result-method Man page
combine_enrichments,list-method Man page
combine_text Man page Source code
combined_coefficient Man page Source code
combined_enrichment Man page
combined_enrichment-class Man page
combined_significant_calls Man page Source code
combined_statistics Man page Source code
csv_annotation_table Man page Source code
enriched_result Man page Source code
enriched_to_fgsea Man page Source code
executable_path Man page Source code
extract_enrich_stats Man page Source code
extract_statistics Man page
extract_statistics,combined_enrichment-method Man page
extract_statistics,statistical_results-method Man page
filter_annotation_graph Man page Source code
generate_annotation_graph Man page
generate_annotation_graph,combined_enrichment-method Man page
generate_annotation_similarity_graph Man page Source code
generate_colors Man page Source code
generate_legend Man page Source code
generate_link Man page Source code
generate_piecharts Man page Source code
generate_table Man page
generate_table,combined_enrichment-method Man page
get_db_annotation Man page Source code
get_significant_annotations Man page
get_significant_annotations,combined_enrichment-method Man page
get_significant_annotations,statistical_results-method Man page
get_significant_annotations_calls Man page Source code
gocats_to_annotation Man page Source code
graph_to_visnetwork Man page Source code
gsea_feature_enrichment Man page Source code
gsea_features-class Man page
have_parallel Source code
hypergeom_features-class Man page
hypergeometric_basic Man page Source code
hypergeometric_feature_enrichment Man page Source code
install_executables Man page Source code
jaccard_coefficient Man page Source code
json_2_annotation Man page Source code
json_annotation_reversal Man page Source code
kable_annotation_table Man page Source code
label_communities Man page Source code
multi_query_list Man page Source code
multi_query_list_calls Source code
node_assign Man page
node_assign-class Man page
overlap_coefficient Man page Source code
remove_edges Man page
remove_edges,cc_graph,numeric-method Man page
remove_edges,character,numeric-method Man page
replace_null Source code
show,annotation-method Man page
show,binomial_result-method Man page
show,cc_graph-method Man page
show,combined_statistics-method Man page
show,enriched_result-method Man page
show,node_assign-method Man page
show,significant_annotations-method Man page
significant_annotations Man page Source code
statistical_results Man page
statistical_results-class Man page
table_from_graph Man page Source code
vis_in_cytoscape Man page Source code
vis_visnetwork Man page Source code
MoseleyBioinformaticsLab/categoryCompare2 documentation built on Nov. 3, 2024, 11:06 a.m.

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