significant_annotations: significant annotations

In MoseleyBioinformaticsLab/categoryCompare2: Meta-Analysis of High-Throughput Experiments Using Feature Annotations

significant annotations

Description

The significant_annotations class holds which annotations from which enrichment were both measured and significant. Each of these slots is a logical matrix with rows named by annotation_id and columns named by the names of the enriched_result that was combined.

Makes a new significant_annotation while checking that everything is valid.

Usage

significant_annotations(significant, measured, sig_calls = NULL)

significant_annotations(significant, measured, sig_calls = NULL)

Arguments

significant	logical matrix of annotations (rows) and experiments (columns)
measured	logical matrix of annotations (rows) and experiments (columns)
sig_calls	character vector of deparsed calls that resulted in signficant and measured

Slots

significant

logical matrix

measured

logical matrix

sig_calls

character representations of calls used to filter the data

MoseleyBioinformaticsLab/categoryCompare2 documentation built on Nov. 3, 2024, 11:06 a.m.