combined_statistics: combined statistics

In MoseleyBioinformaticsLab/categoryCompare2: Meta-Analysis of High-Throughput Experiments Using Feature Annotations

combined statistics

Description

holds the results of extracting a bunch of statistics from a combined_enrichment into one entity. This is useful because we want to enable multiple data representations and simple filtering on the actual data.frame of statistics, and this provides flexibility to enable that.

constructor function for the combined_statistics object, makes sure that empty things get initialized correctly

Usage

combined_statistics(
  statistic_data,
  which_enrichment,
  which_statistic,
  annotation_id,
  significant = NULL,
  measured = NULL,
  use_names = NULL
)

combined_statistics(
  statistic_data,
  which_enrichment,
  which_statistic,
  annotation_id,
  significant = NULL,
  measured = NULL,
  use_names = NULL
)

Arguments

statistic_data	the data.frame of statistics
which_enrichment	which enrichment gave the results
which_statistic	which statistics were calculated in each case
annotation_id	the annotations for which we are returning statistics
significant	the significant annotations
measured	the measured annotations
use_names	the order of naming

Value

combined_statistics

Slots

statistic_data

a data.frame of all of the statistics from all of the enrichments

significant

a significant_annotations object, that may be empty

which_enrichment

a vector giving which enrichment each column of the statistics came from

which_statistic

a vector providing which statistic each column contains

MoseleyBioinformaticsLab/categoryCompare2 documentation built on Nov. 3, 2024, 11:06 a.m.