phangorn-internal: Internal phangorn Functions
In KlausVigo/phangorn: Phylogenetic Reconstruction and Analysis

threshStateC

R Documentation

Internal phangorn Functions

Description

Internal phangorn functions.

Usage

threshStateC(x, thresholds)

candidate_tree(x, method = c("unrooted", "ultrametric", "tipdated"),
  eps = 1e-08, tip.dates = NULL, ...)

hash(x, ...)

map_duplicates(x, dist = length(x) < 500, ...)

edQt(Q = c(1, 1, 1, 1, 1, 1), bf = c(0.25, 0.25, 0.25, 0.25))

pml.free()

pml.init(data, k = 1L)

coords(obj, dim = "3D")

pmlPen(object, lambda, ...)

relabel(x, ref)

KlausVigo/phangorn documentation built on Jan. 25, 2025, 9:46 p.m.