distanceHadamard: Distance Hadamard

In KlausVigo/phangorn: Phylogenetic Reconstruction and Analysis

Distance Hadamard

Description

Distance Hadamard produces spectra of splits from a distance matrix.

Usage

distanceHadamard(dm, eps = 0.001)

Arguments

dm	A distance matrix.
eps	Threshold value for splits.

Value

distanceHadamard returns a matrix. The first column contains the distance spectra, the second one the edge-spectra. If eps is positive an object of with all splits greater eps is returned.

Author(s)

Klaus Schliep [e-mail], Tim White

References

Hendy, M. D. and Penny, D. (1993). Spectral Analysis of Phylogenetic Data. Journal of Classification, 10, 5-24.

See Also

hadamard, lento, plot.networx, neighborNet

Examples

data(yeast)
dm <- dist.hamming(yeast)
dm <- as.matrix(dm)
fit <- distanceHadamard(dm)
lento(fit)
plot(as.networx(fit))

KlausVigo/phangorn documentation built on Nov. 5, 2024, 11 a.m.