lento: Lento plot

In KlausVigo/phangorn: Phylogenetic Reconstruction and Analysis

Lento plot

Description

The lento plot represents support and conflict of splits/bipartitions.

Usage

lento(obj, xlim = NULL, ylim = NULL, main = "Lento plot", sub = NULL,
  xlab = NULL, ylab = NULL, bipart = TRUE, trivial = FALSE,
  col = rgb(0, 0, 0, 0.5), ...)

Arguments

obj	an object of class phylo, multiPhylo or splits
xlim	graphical parameter
ylim	graphical parameter
main	graphical parameter
sub	graphical parameter
xlab	graphical parameter
ylab	graphical parameter
bipart	plot bipartition information.
trivial	logical, whether to present trivial splits (default is FALSE).
col	color for the splits / bipartition.
...	Further arguments passed to or from other methods.

Value

lento returns a plot.

Author(s)

Klaus Schliep [e-mail]

References

Lento, G.M., Hickson, R.E., Chambers G.K., and Penny, D. (1995) Use of spectral analysis to test hypotheses on the origin of pinninpeds. Molecular Biology and Evolution, 12, 28-52.

See Also

as.splits, hadamard

Examples

data(yeast)
yeast.ry <- acgt2ry(yeast)
splits.h <- h2st(yeast.ry)
lento(splits.h, trivial=TRUE)

KlausVigo/phangorn documentation built on Nov. 5, 2024, 11 a.m.