image.phyDat: Plot of a Sequence Alignment
In KlausVigo/phangorn: Phylogenetic Reconstruction and Analysis
image.phyDat R Documentation
Plot of a Sequence Alignment
Description
This function plots an image of an alignment of sequences.
Usage
## S3 method for class 'phyDat'
image(x, ...)
Arguments
x
an object containing sequences, an object of class phyDat.
...
further arguments passed to or from other methods.
Details
A wrapper for using image.DNAbin and image.AAbin.
Codons triplets are handled as nucleotide sequences.
Value
Nothing. The function is called for plotting.
See Also
image.DNAbin, image.AAbin
Examples
data("chloroplast")
image(chloroplast[, 1:50], scheme="Clustal", show.aa = TRUE)
KlausVigo/phangorn documentation built on Nov. 5, 2024, 11 a.m.
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| image.phyDat | R Documentation |
Plot of a Sequence Alignment
Description
This function plots an image of an alignment of sequences.
Usage
## S3 method for class 'phyDat'
image(x, ...)
Arguments
x |
an object containing sequences, an object of class |
... |
further arguments passed to or from other methods. |
Details
A wrapper for using image.DNAbin and image.AAbin.
Codons triplets are handled as nucleotide sequences.
Value
Nothing. The function is called for plotting.
See Also
image.DNAbin, image.AAbin
Examples
data("chloroplast")
image(chloroplast[, 1:50], scheme="Clustal", show.aa = TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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